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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:07:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_A6.html
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#====================================
# Aligned_structures: 2
#   1: 1nova.pdb
#   2: 2bbva.pdb
#
# Length:        333
# Identity:      160/333 ( 48.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    160/333 ( 48.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/333 (  3.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1nova.pdb               1  NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLL   60
2bbva.pdb               1  LT-RLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKVVTRKDVLNQSINFTANRDTFIL   59
                                S PGL FLKCAFA PDF TDPGKGIPD F G V   K  L QSI FT    T  L

1nova.pdb              61  VAPIPGIACLKAEANVGASFS-GVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAG  119
2bbva.pdb              60  IAPTPGVAYWVADVPAGTFPISTTTFNAVNFPGFNSMFGNAAASRSDQVSSFRYASMNVG  119
                            AP PG A   A    G           V FPGF   FG  A      V  FRYASM  G

1nova.pdb             120  VYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNN  179
2bbva.pdb             120  IYPTSNLMQFAGSITVWKCPVKLSNVQFPVAT----TPATSALVHTLVGLDGVLAVGPDN  175
                            YPTSNLMQFAGSI V K P K                          GL    A    N

1nova.pdb             180  YSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFS---GARYTG  236
2bbva.pdb             176  FSESFIKGVFSQSVCNEPDFEFSDILEGIQTLPPANVTVATSGQPFNLAAGAEAVSGIVG  235
                            S SFI G  SQSVCNEP FEF  I EG    PPANVT A      NL           G

1nova.pdb             237  LGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKI  296
2bbva.pdb             236  WGNMDTIVIRVSAPTGAVNSAILKTWACLEYRPNPNAMLYQFGHDSPPCDEVALQEYRTV  295
                            G MD I I V  PTGAVN A LK WAC EYRPNPN  LY F   SP  DE AL  YR  

1nova.pdb             297  ARDIPIAVACKDNATFWERVRSILKSGLNFAST  329
2bbva.pdb             296  ARSLPVAVIAAQNASMWERVKSIIKSSLA----  324
                           AR  P AV    NA  WERV SI KS L     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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