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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:06:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Pept_C1-like.html
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#====================================
# Aligned_structures: 2
#   1: 1cb5a.pdb
#   2: 1gcb.pdb
#
# Length:        467
# Identity:      169/467 ( 36.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    169/467 ( 36.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/467 (  6.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cb5a.pdb               1  SSS--GLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQR-AQHVFQHAVP   57
1gcb.pdb                1  ---SSSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKTRLQKQDNRVFNTVVS   57
                                     K         SD    LA  V       D  L     Q     VF   V 

1cb5a.pdb              58  QEGKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAF  117
1gcb.pdb               58  TDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQI  117
                               P TNQKSSGRCW F   N  RL     LN  EFE SQ YLFF DK E    FL   

1cb5a.pdb             118  VDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPE-SYTTEATRRM  176
1gcb.pdb              118  VSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKW  175
                           V  A      D RLVQ LL  P  DGGQ  M  N V KYG IPK       Y T A R  

1cb5a.pdb             177  NDILNHKMREFCIRLRNLVHSG--ATKGEISATQDVMMEEIFRVVCICLGNP-PE---TF  230
1gcb.pdb              176  NSLLTTKLREFAETLRTALKERSAD-DSIIVTLREQMQREIFRLMSLFMDIPPVQPNEQF  234
                           N  L  K REF   LR             I      M  EIFR        P       F

1cb5a.pdb             231  TWEYRDKDKNYQKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSN  290
1gcb.pdb              235  TWEYVDKDKKIHTIK-STPLEFASKYA-K-LDPSTPVSLIND-P-RHPYGKLIKIDRLGN  289
                           TWEY DKDK    I   TPLEF                L ND    H   KL     L N

1cb5a.pdb             291  MVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFG  350
1gcb.pdb              290  VLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIG-  348
                             GG    Y N     L K V        AV FG    K    K G  D  L        

1cb5a.pdb             351  VSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDG-AFTKWRVENSWGEDHGHKGYLCM  409
1gcb.pdb              349  Y-NLPQQKASRIRYHESLMTHAMLITGCHVDETS--KLPLRYRVENSWGKDSGKDGLYVM  405
                                  KA R    ESLMTHAM  T                RVENSWG D G  G   M

1cb5a.pdb             410  TDEWFSEYVYEVVVDRKHVPEEVLAVL---EQEPIILPAWDPMGALA  453
1gcb.pdb              406  TQKYFEEYCFQIVVDINELPKELASKFTSGKEEPIVLPIWDPMGALA  452
                           T   F EY    VVD    P E          EPI LP WDPMGALA


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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