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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:29:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Pectinesterase.html
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#====================================
# Aligned_structures: 2
#   1: 1gq8a.pdb
#   2: 1qjva.pdb
#
# Length:        375
# Identity:       95/375 ( 25.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     95/375 ( 25.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           90/375 ( 24.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gq8a.pdb               1  SSTVGPNVVVAADG-S--GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKN   57
1qjva.pdb               1  --ATTYNAVVSKSSSDGKT-FKTIADAIASAPA-GSTPFVILIKNGVYNERLTIT--RNN   54
                                 N VV           KT   A A AP    T  VI IK GVY E         N

1gq8a.pdb              58  IMFLGDGRTSTIITASKNVQD------GSTTFNSATVAAVGAGFLARDITFQNTAGA-AK  110
1qjva.pdb              55  LHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPA-  113
                               G  R    I A               T  S T       F A   T  N     A 

1gq8a.pdb             111  --------------HQAVALRVG--SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT  154
1qjva.pdb             114  NQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGT  173
                                          QAVAL V    D   F       YQD LYV   R FF  C I GT

1gq8a.pdb             155  VDFIFGNAAVVLQDCDIHARRPG---SGQ-KNMVTAQGRTDPNQNTGIVIQKSRIGATSD  210
1qjva.pdb             174  VDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTN-INQKYGLVITNSRVIRES-  231
                           VDFIFG        CD   R      SG      TA      NQ  G VI  SR    S 

1gq8a.pdb             211  LQPVQSSF---PTYLGRPWK--------------EYSRTVVMQSSITNVINPAGWFPWDG  253
1qjva.pdb             232  -----DSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKD  286
                                 S       LGRPW                   TV    S  N I          

1gq8a.pdb             254  NF--------A-LDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG  304
1qjva.pdb             287  --KNGNTIWFNPE-DSRFFEYKSYGAGAA-----VSKDRRQ-LTDAQAAEYTQSKVLG--  335
                                              EY   GAGAA       K          A   T        

1gq8a.pdb             305  SWLKAT-TFPFSLGL  318
1qjva.pdb             336  ------DWTPTLP--  342
                                    P     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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