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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:45:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PRK.html
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#====================================
# Aligned_structures: 2
#   1: 1a7j.pdb
#   2: 1esma.pdb
#
# Length:        404
# Identity:       21/404 (  5.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     21/404 (  5.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          224/404 ( 55.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a7j.pdb                1  SKK-----HPIISV-------TGSSTS-----------------------TVKHTFDQIF   25
1esma.pdb               1  ---QTLTPYLQFDRNQWAALRDSVP--TLSEDEIARLKGINEDLSLEEVAEIYLPLSRLL   55
                                                                                       

1a7j.pdb               26  RREGVKAVSIEGDAFHRFNRADMKAELDRRYAAG-DATFSHFSYE----------ANELK   74
1esma.pdb              56  NFYI----------------SSNLRRQAVLEQFLGTNGQRI----PYIISIAGSVAVGKS   95
                                                                                  A    

1a7j.pdb               75  ELERVFREYGETG---QGRTRTYVA-----------------------------------   96
1esma.pdb              96  TTARVLQALLSRWPEHRRVELIT--TDGFLHPNQVLKERGLKKKGFPESYDHRLVKFVSD  153
                              RV                                                       

1a7j.pdb               97  ----RTGVA-------PGNFTD-WRDFDSDSHLLFYEGLHGAVVN-----S-EVNIAGLA  138
1esma.pdb             154  LKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGDYPHDPHHVFVSDFV  213
                                  V                         L  EGL              V      

1a7j.pdb              139  DLKIGVVPVINLEWIQKIHRDRATRGY--------------TTEAVTDVIL------RR-  177
1esma.pdb             214  DFSIYVDAPEDLLQTWYINRFLKFR--EGAFTDPDSYFHNYAKLTKEEAIKTATLWKEIN  271
                           D  I V     L     I R    R                        I          

1a7j.pdb              178  MHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESV--VVIRFRNPRGIDFPY  235
1esma.pdb             272  WLNLKQNILPTRERASLILTKSANH------------------AVEEVRLRK--------  305
                                  I P                                      R R         

1a7j.pdb              236  LTSMIHGSWMSRANSIVVPGNKLDLAMQLILTPLIDRVVRESKV  279
1esma.pdb                  --------------------------------------------     
                                                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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