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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:33:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PNTB.html
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#====================================
# Aligned_structures: 2
#   1: 1d4oa.pdb
#   2: 1e3ta.pdb
#
# Length:        186
# Identity:       77/186 ( 41.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/186 ( 41.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/186 ( 10.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d4oa.pdb               1  GTHT----EINLDNAIDMIR-EANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG   55
1e3ta.pdb               1  ----RSVKAGSAEDAA-FIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA   55
                                         A   I   A   II PGYG   A AQ         L   G  V   

1d4oa.pdb              56  IHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHD-FPDTDLVLVIGANDTVNSAAQEDP  114
1e3ta.pdb              56  IHPVAGRMPGHMNVLLAEANVPYDEVFE-LEEINSSFQTADVAFVIGANDVTNPAAKTDP  114
                           IHPVAGRMPG  NVLLAEA VPYD V E  E     F   D   VIGAND  N AA  DP

1d4oa.pdb             115  NSIIAGMPVLEVWKSKQVIVMKRSLGVGY-AAVDNPIFYKPNTAMLLGDAKKTCDALQAK  173
1e3ta.pdb             115  SSPIYGMPILDVEKAGTVLFIKRSMASGYAGVE-NELFFRNNTMMLFGDAKKMTEQIVQ-  172
                            S I GMP L V K   V   KRS   GY     N  F   NT ML GDAKK        

1d4oa.pdb             174  VRES--  177
1e3ta.pdb             173  A---MN  175
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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