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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:32:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PMSR.html
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#====================================
# Aligned_structures: 2
#   1: 1ff3a.pdb
#   2: 1fvga.pdb
#
# Length:        213
# Identity:      108/213 ( 50.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    108/213 ( 50.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/213 ( 12.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ff3a.pdb               1  SLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNV-PDG-MEIAIFAMGFWGVERLF   58
1fvga.pdb               1  ------KIVSPQEALPGRKEPLVVAAKHHVNGNRTVEPFPEGTQ--AVFGGCFWGAERKF   52
                                   VSP  ALPGR  P  VA  H VNG       P G    A F   FWG ER F

1ff3a.pdb              59  WQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHD  118
1fvga.pdb              53  WTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHD  112
                           W L GVYST  G  GGYTPNPTY EVCSG TGHAE VR V  P  IS E LL VFWENHD

1ff3a.pdb             119  PAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPF  178
1fvga.pdb             113  PTQGR-QGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGF-GLITTDIREGQTF  170
                           P QG  QGNDHG QYRSAIYP   E   AA  S E  Q           ITT I     F

1ff3a.pdb             179  YYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA-  210
1fvga.pdb             171  YYAEDYHQQYLSKDPD----GY----------C  189
                           YYAED HQQYL K P                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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