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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:20:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PGI.html
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#====================================
# Aligned_structures: 2
#   1: 1dqra.pdb
#   2: 2pgi.pdb
#
# Length:        595
# Identity:       77/595 ( 12.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/595 ( 12.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          193/595 ( 32.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dqra.pdb               1  AALTRNPQFQK----LQQWHREHGSELNLRHLFDTDKE--RFNHFSLTLNTNHGHILLDY   54
2pgi.pdb                1  -----------AISFDYSNALP----------------FMQENELDY-------------   20
                                                                     N                 

1dqra.pdb              55  SKNLVTEEVMHMLLDLAKSRGVEAARESMFNGEKINSTEDR---A-VLHVALRNRSNTPI  110
2pgi.pdb               21  -----LSE------------FVKAAHHMLHERKG-------PGSDFLGWVDWPI------   50
                                  E             V AA                        V          

1dqra.pdb             111  VVDGKDVMPE--VNKVLDKMKAFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTE  168
2pgi.pdb               51  ----------RYDKNEFSRIKQAAERIR-N--------HSDALVVIGIGGSYLGARAAIE   91
                                               K    R R                 IGIGGS LG     E

1dqra.pdb             169  ALKP----YSSGGPRVW-FVSNIDGTHIAKTLACLNPE--SSLFIIASKTFTTQETITNA  221
2pgi.pdb               92  ALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLE--GKDLSINVISKSGTTTEPAIAF  149
                           AL                   NI  T I   L  L            SK  TT E     

1dqra.pdb             222  KTAKDWFLLSAKDPSTVAKHFVALST------NTAKVKEFGIDPQ-NMFEFWDWVGGRYS  274
2pgi.pdb              150  RIFRDYMEKKY-GKEEARKRIYVTTDRTKGALK-KLADQE-G---YETFVIPDNIGG-RY  202
                               D             K                             F   D  GG   

1dqra.pdb             275  LWSA--IGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLAMLGIWYINCFGC  332
2pgi.pdb              203  SVLTAVGLLPIAVAG-L-NIDRMMEGAASAYHKYNNPDLLTNESYQYAAVRNILYR-KGK  259
                                   L IA      N      GA           L  N     A          G 

1dqra.pdb             333  ETQAVLPYDQYLHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQ  392
2pgi.pdb              260  AIELLVNYEPSLHYVSEWWKQLFGESEGKD---------Q-KGLFPASVDFTTDLHSMGQ  309
                                  Y   LH       Q   ES GK             G        T   H   Q

1dqra.pdb             393  LIHQGTKMIPCDFLIPVQTQHPIRK-----------GLHHK-ILLANFLAQTEALMKGKS  440
2pgi.pdb              310  YVQEGRRNLIETVLHVKKPQIELT-IQEDPENIDGLNFLAGKTLDEVNKKAFQGTLLA--  366
                               G        L     Q                       L                

1dqra.pdb             441  TEEARKELQAAGKSPEDLMKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQ  500
2pgi.pdb              367  --HVD-----------------------GGVPNLIVELDEMNEYTFGEMVYFFEKACGIS  401
                                                       G  P              G      E      

1dqra.pdb             501  GVVWDINSFDQWGVELGKQLAKKIEPELDGSSPVTSHDSSTNGLINFIKQQREAK  555
2pgi.pdb              402  GHLLGVNPFDQPGVEAYKKNMFALLG--KPGF-----EDEKAALMKRL-------  442
                           G     N FDQ GVE  K                         L           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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