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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 11:26:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/OTCace.html
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#====================================
# Aligned_structures: 5
#   1: 1a1s.pdb
#   2: 1orta.pdb
#   3: 1otha.pdb
#   4: 2otca.pdb
#   5: 3csua.pdb
#
# Length:        357
# Identity:       39/357 ( 10.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     83/357 ( 23.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           83/357 ( 23.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a1s.pdb                1  -VVSLAGRDLLCLQDYTAEEIWTILETAKMFKIWQK-IGKPHRLLEGKTLAMIFQKPSTR   58
1orta.pdb               1  -AFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKY-TGTEQQHLKRKNIALIFEKTSTR   58
1otha.pdb               1  -KVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTR   59
2otca.pdb               1  --SGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKK-SGKEEAKLTGKNIALIFEKDSTR   57
3csua.pdb               1  A-NPLYQKHIISINDLSRDDLNLVLATAAKLKANP----Q-PELLKHKVIASCFFEASTR   54
                                     l l      e    L     lK            L  K  a iF k STR

1a1s.pdb               59  TRVSFEVAMAHLGGHALYLNAQ-DL---QLRRGETIADTARVLSRYVDAIMARVYDHKDV  114
1orta.pdb              59  TRCAFEVAAYDQGANVTYIDPN-SS---QIGHKESMKDTARVLGRMYDAIGYRGFKQEIV  114
1otha.pdb              60  TRLSTETGFALLGGHPCFLTTQ-DI---HLGVNESLTDTARVLSSMADAVLARVYKQSDL  115
2otca.pdb              58  TRCSFEVAAYDQGARVTYLGPS-GS---QIGHKESIKDTARVLGRMYDGIQYRGYGQEIV  113
3csua.pdb              55  TRLSFETSMHRLGASVVGFSDSG-KKGE------TLADTISVISTYVDAIVMRHPQEGAA  107
                           TR sfE      G                        DTarVl    Dai  R       

1a1s.pdb              115  EDLAKYAT-VPVINGLS-DFSHPCQALADYMTIWEKKG-T-IKGVKVVYVGDG-N-NVAH  168
1orta.pdb             115  EELAKFAG-VPVFNGLT-DEYHPTQMLADVLTMREHSD-KPLHDISYAYLGDA-RNNMGN  170
1otha.pdb             116  DTLAKEAS-IPIINGLS-DLYHPIQILADYLTLQEHYS-S-LKGLTLSWIGDG-N-NILH  169
2otca.pdb             114  ETLAEYAR-VPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA-RNNMGN  170
3csua.pdb             108  RLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQG-R-LDNLHVAMVGDLKYGRTVH  165
                             la  a  vPv Ngl     HP Q LaD  T  E               GD    n   

1a1s.pdb              169  SLMIAGTKLG-ADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY  227
1orta.pdb             171  SLLLIGAKLG-MDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH  229
1otha.pdb             170  SIMMSAAKFG-MHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI  228
2otca.pdb             171  SMLEAAALTG-LDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIY  229
3csua.pdb             166  SLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG----IAWSLHSSIEEVMAEVDILY  221
                           S     ak g        P    p           a        L  d        d   

1a1s.pdb              228  TDVWASMG-Q-EAEAEERRKIFRPFQVNKDLVKHA-KPDYMFMHCLPAHR----------  274
1orta.pdb             230  TDVWV-SMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQI  288
1otha.pdb             229  TDTWI-SMGR-EEEKKKRLQAFQGYQVTMKTAKVA-ASDWTFLHCLPRK-----------  274
2otca.pdb             230  TDVWV-SMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKM  288
3csua.pdb             222  MTR---------------------FVLRASDLHNA-KANMKVLHPLPRV-----------  248
                           td                       qv              f HcLP             

1a1s.pdb              275  ---------GEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGGIK---------  313
1orta.pdb             289  AEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI----------  335
1otha.pdb             275  ---------PEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDY-SPQLQKPKF  321
2otca.pdb             289  AEEFG-LHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK-----------  333
3csua.pdb             249  ----------DEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRD-LVL------  288
                                      Ev   V  sp    f qAeNr     A     l             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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