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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:28:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NiFeSe_Hases.html
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#====================================
# Aligned_structures: 3
#   1: 1frfl.pdb
#   2: 1h2al.pdb
#   3: 2frvb.pdb
#
# Length:        545
# Identity:      291/545 ( 53.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    472/545 ( 86.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/545 (  3.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1frfl.pdb               1  TPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQH   60
1h2al.pdb               1  ---SSYSGPIVVDPVTRIEGHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQH   57
2frvb.pdb               1  -------NKIVVDPITRIEGHLRIEVEVEGGKIKNAWSMSTLFRGLEMILKGRDPRDAQH   53
                                  gpIVVDPiTRIEGHLRIeVEVEnGKvKnAwSsStLFRGLEiILKGRDPRDAQH

1frfl.pdb              61  FTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALD  120
1h2al.pdb              58  FTQRTCGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALD  117
2frvb.pdb              54  FTQRACGVCTYVHALASVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALD  113
                           FTQRaCGVCTYvHALAS RcVDnaVgV IP NAt mRNLvmgaQYlHDHlVHFYHLHALD

1frfl.pdb             121  WVDVTAALKADPNKAAKLAASIDTARTG-NSEKALKAVQDKLKAFVESGQLGIFTNAYFL  179
1h2al.pdb             118  FVDVTAALKADPAKAAKVASSISPR---KTTAADLKAVQDKLKTFVETGQLGPFTNAYFL  174
2frvb.pdb             114  WVNVANALNADPAKAARLANDLSPK---KTTTESLKAVQAKVKALVESGQLGIFTNAYFL  170
                           wVdVtaALkADPaKAAklA sisp     tt   LKAVQdKlKafVEsGQLGiFTNAYFL

1frfl.pdb             180  GGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTK  239
1h2al.pdb             175  GGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTP  234
2frvb.pdb             171  GGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRP  230
                           GGHpAYyLppEvnLIATAHYLEALr QVKAArAMAifGaKNPHTQFTVVGGctnYd Ltp

1frfl.pdb             240  DPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKH  299
1h2al.pdb             235  QRIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDE-Y--D-  290
2frvb.pdb             231  ERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDE-Y--D-  286
                            riAef aL KEv  Fv evYIpDLLaVAgfYKdW giGgTsNfltfGEFptDe y  d 

1frfl.pdb             300  LATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDK  359
1h2al.pdb             291  LNSRFFKPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGA-EARHPWKGQTQPKYTDLHGD  349
2frvb.pdb             287  LNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGA-GAHHPYKGVTKPKWTEFHGE  345
                           Lnsr fp GVi grDl kvd fd   IeEhVkySWYega  a HPykGvT PKyT lhg 

1frfl.pdb             360  DHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRT  419
1h2al.pdb             350  DRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRT  409
2frvb.pdb             346  DRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRT  405
                           DrYSWMKAPRYkGeamEvGPLA vliAYakghp  kkvvD VL kLgVgpeALfSTLGRT

1frfl.pdb             420  AARGIETAIVCANMEKWIKEMADSGA-KDNTLCAKWEMPEESKGVGLADAPRGSLSHWIR  478
1h2al.pdb             410  AARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIR  469
2frvb.pdb             406  AARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIV  465
                           AARGIeta  a  vevwl e  dn a gdn lca WemP es GVGfvnAPRG LSHWIr

1frfl.pdb             479  IKGKKIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCI  538
1h2al.pdb             470  IEDGKIGNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVADAKRPVEILRTVHSFDPCI  529
2frvb.pdb             466  QRGGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCI  525
                           i ggKI NFQLVVPSTWnLGPRc  g  SpVE aLIGTPiADpKRPVEILRTVHsfDPCI

1frfl.pdb             539  ACGVH  543
1h2al.pdb             530  ACGVH  534
2frvb.pdb             526  ACGVH  530
                           ACGVH


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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