################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:34:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NO_synthase.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1ed5a.pdb
#   2: 1nos.pdb
#   3: 4nosa.pdb
#
# Length:        440
# Identity:      168/440 ( 38.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    284/440 ( 64.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          136/440 ( 30.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ed5a.pdb               1  GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVL-PRKLQTRPSPGPPPAEQL   59
1nos.pdb                1  -----------------------------------------NPKSLTRGPRDKPTPLEEL   19
4nosa.pdb               1  --RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMT-PKSLTRGPRDKPTPPDEL   57
                                                                     PksLtrgPrdkPtP eeL

1ed5a.pdb              60  LSQARDFINQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPR  119
1nos.pdb               20  LPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPR   79
4nosa.pdb              58  LPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPR  117
                           LpqAieFiNQYYgSfKeakieeHlaRleaVtkEietTGTYqLt dELiFatKqAWRNAPR

1ed5a.pdb             120  CVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNLRSAITVFPQRAPGRGDFRI  179
1nos.pdb               80  CIGRIQWSNLQVFDARNCSTAQEMFQHICRHILYATNNGNIRSAITVFPQRSDGKHDFRL  139
4nosa.pdb             118  CIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRV  177
                           CiGRIQWsnLQVFDAR CStAqEMF hICrHi YaTNnGNiRSAITVFPQRsdGkhDFR 

1ed5a.pdb             180  WNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELF  239
1nos.pdb              140  WNSQLIRYAGYQMPDGTIRGDAATLEFTQLCIDLGWKPRYGRFDVLPLVLQADGQDPEVF  199
4nosa.pdb             178  WNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELF  237
                           WNsQLiRYAGYqmpDGsiRGDpAnvEfTqLCIdlGWkP yGRFDVlPLvLQA g dPElF

1ed5a.pdb             240  VLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIG  299
1nos.pdb              200  EIPPDLVLEVTM---------ELGLKWYALPAVANMLLEVGGLEFPACPFNGWYMGTEIG  250
4nosa.pdb             238  EIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIG  297
                           eiPPdLVLEV m         eLgLkWYALPAVaNMLLEvGGLEFpacPFnGWYMgTEIG

1ed5a.pdb             300  TRNLCDPHRYNILEDVAVCMD----LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVD  355
1nos.pdb              251  V----------RDF-------CDTQDRAVT-EI----------NVAVLHSFQKQNVTIMD  282
4nosa.pdb             298  VRDFCDVQRYNILEEVGRRMG----LETHKLASLWKDQAVVEINIAVIHSFQKQNVTIMD  353
                           v          ile           l t t  s          N AVlHSFQkqnVTImD

1ed5a.pdb             356  HHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFH--QEMVNYILSPAFRYQP  413
1nos.pdb              283  HHTASESFMKHMQNEY--------------------------LSPFY-----YYQIEPW-  310
4nosa.pdb             354  HHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFH--QEMLNYVLSPFYYYQV  411
                           HH A eSFMKhmqNEy                            qem     sp   yq 

1ed5a.pdb             414  ------DPW-----------  416
1nos.pdb              311  KTHIWQN--------EHHHH  322
4nosa.pdb             412  ------EAWKTHVWQ-----  420
                                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################