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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:39:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NMT.html
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#====================================
# Aligned_structures: 2
#   1: 1nmta.pdb
#   2: 2nmta.pdb
#
# Length:        427
# Identity:      219/427 ( 51.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    219/427 ( 51.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/427 (  9.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1nmta.pdb               1  ----------------------EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLD   38
2nmta.pdb               1  AMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLE   60
                                                 EGPIDK KTPED    PLPL S FEW   D D   QL 

1nmta.pdb              39  ELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATP   98
2nmta.pdb              61  DVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIP  120
                               LL  NYVED DA FRF Y  EFF WALK PGW KDWH GVRVK T KLVAFI A P

1nmta.pdb              99  VTFKLNKSNKVIDSVEINFLCIHKKLRNKRLAPVLIKEITRRVNKQNIWQALYTGGSILP  158
2nmta.pdb             121  VTLGV--RGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLP  178
                           VT       K   SVEINFLC HK LR KRL PVLIKEITRRVNK  IW ALYT G  LP

1nmta.pdb             159  TPLTTCRYQHRPINWSKLHDVGFSHLPPNQTKSSMVASYTLPNNPKLKGLRPMTGKDVST  218
2nmta.pdb             179  APVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQ  238
                            P  TCRY HRP NW KL  V F  LP   T   M A   LP   K  GLR     D   

1nmta.pdb             219  VLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDS--NVVKSYVVEDENGIITDYFSYY  276
2nmta.pdb             239  VFELFKRYQSRFELIQIFTKEEFEHNFIGEE-SLPLDKQVIFSYVVEQPDGKITDFFSFY  297
                           V  L   YQ RF   Q FT EEF H   G          V  SYVVE   G ITD FS Y

1nmta.pdb             277  LLPFTVLDNAQHDELGIAYLFYYASDS-FEK----------PNYKKRLNELITDALITSK  325
2nmta.pdb             298  SLPFTILNNTKYKDLGIGYLYYYATDADFQ-FKDRFDPKATKALKTRLCELIYDACILAK  356
                            LPFT L N     LGI YL YYA D  F               K RL ELI DA I  K

1nmta.pdb             326  KFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTS  385
2nmta.pdb             357  NANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLN-PDNSNDIKRRS  415
                               DVFN LT QDNT FL D KFG GDGFLN YLFNYR  P  GG             S

1nmta.pdb             386  GIGVVLL  392
2nmta.pdb             416  NVGVVML  422
                             GVV L


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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