################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:29:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NHase_alpha.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1irea.pdb
#   2: 2ahja.pdb
#
# Length:        204
# Identity:       81/204 ( 39.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/204 ( 39.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/204 (  7.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1irea.pdb               1  TEN---ILRKSDEEIQKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKV   57
2ahja.pdb               1  ---IDHPAQA---PVSDRAWALFRALDGKG----LVPDGYVEGWKKTFEEDFSPRRGAEL   50
                                               A   AL                      E    P  GA  

1irea.pdb              58  VVKAWTDPEFKKRLLADGTEACKELGIGGLQGEDMMWVENTDEVHHVVVCTLSYPWPVLG  117
2ahja.pdb              51  VARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLSTAWPILG  110
                           V  AWTDPEF   LL DGT A    G  G QGE    VE T     V VC LS  WP LG

1irea.pdb             118  LPPNWFKEPQYRSRVVREPRQLLKEEFGFEVPPSKEIKVWDSSSEMRFVVLPQRPAGTDG  177
2ahja.pdb             111  LPPTWYKSFEYRARVVREPRKVLSE-MGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEG  169
                           LPP W K   YR RVVREPR  L E  G E     EI V D   E R  VLPQRPAGT G

1irea.pdb             178  WSEEELATLVTRESMIGVEPAKAV  201
2ahja.pdb             170  WSQEQLQEIVTKDCLIGVAIPQV-  192
                           WS E L   VT    IGV      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################