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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:27:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NADHdh_2.html
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#====================================
# Aligned_structures: 3
#   1: 1d4aa.pdb
#   2: 1qr2a.pdb
#   3: 1qrda.pdb
#
# Length:        276
# Identity:      100/276 ( 36.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    211/276 ( 76.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           49/276 ( 17.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d4aa.pdb               1  VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLK   60
1qr2a.pdb               1  AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLS   60
1qrda.pdb               1  AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK   60
                           agrraLIVlAH ErtSFNyamKeaAv aLkkkGweVveSDLYAMNFnP isrkDITG lk

1d4aa.pdb              61  DPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVF  120
1qr2a.pdb              61  NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL  120
1qrda.pdb              61  DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL  120
                           dpenFqYpvEs lAYKeg LspDIvaEQKKleaADLVIFQFPLyWFgVPAILKGWfeRVl

1d4aa.pdb             121  IGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFCG  180
1qr2a.pdb             121  CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG  180
1qrda.pdb             121  VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG  180
                             gFAytya mYDkGpfq KkalLSiTTGGsgsMYslqGvhGDmnviLWPiQsGiLhFCG

1d4aa.pdb             181  FQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKK  240
1qr2a.pdb             181  FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCT--------AHWH-----  227
1qrda.pdb             181  FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK  240
                           FqVLePQl ysightp daR q legWkkRLetiW E Plyfa        fqag     

1d4aa.pdb             241  EVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK---  273
1qr2a.pdb             228  ---------------------------------FGQ  230
1qrda.pdb             241  EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK---  273
                                                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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