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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:27:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MutS_N.html
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#====================================
# Aligned_structures: 2
#   1: 1e3ma.pdb
#   2: 1ewqa.pdb
#
# Length:        123
# Identity:       38/123 ( 30.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     38/123 ( 30.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/123 ( 15.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3ma.pdb               1  SA---------IENFDAHTPQQYLRLKAQHPEILLFYR-GDFYELFYDDAKRASQLLDIS   50
1ewqa.pdb               1  --EGLKGEGPGPLPPLL---QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV   55
                                               QQY  L  Q P  LL    GDFYE F  DA R    L   

1e3ma.pdb              51  LTKRGASAGEPIPAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVT  110
1ewqa.pdb              56  LTHKTSKD-FTTPAGIPLRAFEAYAERLLK-GFRLAVADQVEPAEEAEGLVRREVTQLLT  113
                           LT          PAGIP  A E Y   L   G   A   Q        G V R V    T

1e3ma.pdb             111  P--  111
1ewqa.pdb             114  PGT  116
                           P  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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