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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:26:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MutS_D2.html
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#====================================
# Aligned_structures: 2
#   1: 1e3ma.pdb
#   2: 1ewqa.pdb
#
# Length:        176
# Identity:       35/176 ( 19.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/176 ( 19.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           59/176 ( 33.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3ma.pdb               1  GTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRET-AAELQRTNPA   59
1ewqa.pdb               1  --LLQESLLPR-EANYLAAIATG-DGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPA   56
                                E LL     N LAAI     G G A LD S G F             EL R  PA

1e3ma.pdb              60  ELLYAEDFA------ESLIEG-RRG--LRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVE  110
1ewqa.pdb              57  EVLLAPEL-LENGAFLDEFRKRF--PVLSEAPFE--------------PEGE--------   91
                           E L A                      L   P                            

1e3ma.pdb             111  NAPRGLCAAGCLLQYAKDTQRTTLPHIRSIT-EREQDSII----------------  149
1ewqa.pdb              92  GPLALRRARGALLAYAQRTQGGALS-LQPFRFYDPGAF--RLPEATLRALEVFEPL  144
                                  A G LL YA  TQ   L                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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