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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:25:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ModA.html
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#====================================
# Aligned_structures: 2
#   1: 1atg.pdb
#   2: 1wod.pdb
#
# Length:        240
# Identity:       53/240 ( 22.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     53/240 ( 22.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/240 (  7.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1atg.pdb                1  -ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKS   59
1wod.pdb                1  GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKW   60
                               V  A          A QF K  G  VV S  SS     QI  GAP   F SAD K 

1atg.pdb               60  PEKLDNQGFALPGSRFTYAIGKLVLWSA-KPG----LVDNQGKVLAGNG-WRHIAISNPQ  113
1wod.pdb               61  MDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLL-NGGRLAVGDPE  119
                                         R T     LV              D               A   P 

1atg.pdb              114  IAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQA-A  172
1wod.pdb              120  HVPAGIYAKEALQKLGAWDTLS--PKLAPAEDVRGALALVERNEAPLGIVYGSDAVA-SK  176
                             P G      L  LG  D L        A  V  A        A LG V          

1atg.pdb              173  AKIPGSHWFPPANYYEPIVQQAVITKSTAE-KANAEQFMSWMKGPKAVAIIKAAGYVLPQ  231
1wod.pdb              177  GVKV--VATFPEDSHKKVEYPVAVVEGH--NNATVKAFYDYLKGPQAAEIFKRYGFTIK-  231
                                     P                     A    F    KGP A  I K  G     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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