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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:24:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mmob.html
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#====================================
# Aligned_structures: 2
#   1: 1mhyb.pdb
#   2: 1mtyb.pdb
#
# Length:        387
# Identity:      227/387 ( 58.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    227/387 ( 58.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/387 (  1.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mhyb.pdb               1  --KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAG   58
1mtyb.pdb               1  ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAG   60
                              RGLTDPE AA I  A P   LD   K  YF  PRWK L EYE L  YAQPN DWIAG

1mhyb.pdb              59  GLDWGDWTQKFHGGRPSWGNESTELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLA  118
1mtyb.pdb              61  GLDWGDWTQKFHGGRPSWGNETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQ  120
                           GLDWGDWTQKFHGGRPSWGNE TELRT DW  HRDP RRWH PYVKDK EE RYT RFL 

1mhyb.pdb             119  AYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALD  178
1mtyb.pdb             121  GYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFD  180
                            YS  G IR   P WRDE  N Y GA L  EYGLFNAHS   R  LSD  R    F   D

1mhyb.pdb             179  KVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEIL  238
1mtyb.pdb             181  KIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA  240
                           K D AQMIQ ER F AK VPGFD ST VPK  WT    Y  AR  V   WQ V DWNE  

1mhyb.pdb             239  WAGHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLAN  298
1mtyb.pdb             241  FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGD  300
                              HAVYDA FGQF RREFFQRLA   GD LTPFF  Q QTYFQ       DL   CL  

1mhyb.pdb             299  DSEFGAHNRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGA-TDSAGVSEALQRVFGD  357
1mtyb.pdb             301  DPEFSDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAG---TTDKEEITASLYRVVDD  357
                           D EF   NRT    WT   L    AAL DF GL AK        TD       L RV  D

1mhyb.pdb             358  WKIDYADKIGFRVDVDQKVDAVLAGY-  383
1mtyb.pdb             358  WIEDYASRIDFKADRDQIVKAVLAGLK  384
                           W  DYA  I F  D DQ V AVLAG  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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