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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:18:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MIP.html
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#====================================
# Aligned_structures: 2
#   1: 1fx8a.pdb
#   2: 1ih5a.pdb
#
# Length:        276
# Identity:       55/276 ( 19.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/276 ( 19.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           74/276 ( 26.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fx8a.pdb               1  TLKGQCIAEFLGTGLLIFFGVGCVAALK-VAGASFGQWEISVIWGLGVAMAIYLT--AGV   57
1ih5a.pdb               1  LFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVG   60
                                  AEFL T L  F   G     K   G         V   L     I        

1fx8a.pdb              58  SGAH--LNPAVTIALWLFAC----FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFE  111
1ih5a.pdb              61  HISGAHLNPAVTLGLLLSCQISIFRALM----YIIAQCVGAIVATAILSGITSSL-TG--  113
                                 LNPAVT  L L                I  Q  GA  A A   G    L     

1fx8a.pdb             112  QTHHIVRGSVESVDLAGTFSTYPNPHINFV------QAFAVEMVITAILMGLILALTD-D  164
1ih5a.pdb             114  --NSL------------GRNDLA-------DGVNSGQGLGIEIIGTLQLVLCVLATTDRR  152
                                                               Q    E   T  L    LA TD  

1fx8a.pdb             165  G--NGVPRGPLAPLLIGLLIAVIGASMGPLTG--FAMNPARDFGPKVFAWLAGWGNVAFT  220
1ih5a.pdb             153  RRDLGG-S---APLAIGLSVALGHLLAIDY--TGCGINPARSFGSAVIT----HNFS---  199
                               G      APL IGL  A                NPAR FG  V             

1fx8a.pdb             221  GGRDIPYFLVP-LFGPIVGAIVGAFAYRKLIGRH-L  254
1ih5a.pdb             200  -----------NHWIFWVGPFIGGALAVLIYDFILA  224
                                            VG   G             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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