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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:16:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MGS.html
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#====================================
# Aligned_structures: 2
#   1: 1b93a.pdb
#   2: 1cs0a.pdb
#
# Length:        154
# Identity:       17/154 ( 11.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     17/154 ( 11.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/154 ( 14.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b93a.pdb               1  MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNV   60
1cs0a.pdb               1  ---NS-TMKKHGRALLSVREGDKERVVDLAAKLL-KQ-GFELDATHGTAIVLGE-AGINP   53
                                 T        L      K                  L AT  T        G N 

1b93a.pdb              61  NAMLSGPMGGDQ-QVGALISEGKIDVLIFFWDPLNAVP-HDP-DVKALLRLATVWNIPVA  117
1cs0a.pdb              54  RLVNKVHEGR--PHIQDRIKNGEYTYIINTTSG-----RRAIEDSRVIRRSALQYKVHYD  106
                                   G         I  G     I               D     R A        

1b93a.pdb             118  TNVATADFIIQS-P--HFNDAVDILIPDYQRYLA  148
1cs0a.pdb             107  TTLNGGFATAMALNADATEKVIS-V-QEMHAQIK  138
                           T                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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