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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:14:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MCR_beta.html
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#====================================
# Aligned_structures: 3
#   1: 1e6vb.pdb
#   2: 1e6yb.pdb
#   3: 1mrob.pdb
#
# Length:        256
# Identity:      142/256 ( 55.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    226/256 ( 88.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/256 (  3.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e6vb.pdb               1  GYALRNIMVNHIVAATRKNTMQAVCLAATLQQTAMFEMGDALGPFERLHLLGYAYQGLNA   60
1e6yb.pdb               1  GFSLRNIMANHVAAISNRNAMNASALSSIYEQSGIFEMGGAVGMFERHQLLGLAYQGLNA   60
1mrob.pdb               1  GYALRNIMVNHVVAATLKNTLQAAALSTILEQTAMFEMGDAVGAFERMHLLGLAYQGMNA   60
                           GyaLRNIMvNHvvAat kNtmqA aLs ileQtamFEMGdAvG FER hLLGlAYQGlNA

1e6vb.pdb              61  DNMVYDIVKKHGKEGTVGTVVREVVERALEDGVIEVKEEL-PSFKVYKANDMDLWNAYAA  119
1e6yb.pdb              61  NNLLYDIVKENGKDGTIGTVIESVVRRAIEAGIISVDKTAPSGYNFYKANDVPKWNACAA  120
1mrob.pdb              61  DNLVFDLVKANGKEGTVGSVIADLVERALEDGVIKVEKEL-TDYKVYGTDDLAMWNAYAA  119
                           dNlvyDiVK nGKeGTvGtVi  vVeRAlEdGvI V kel   ykvYkanD   WNAyAA

1e6vb.pdb             120  AGLVAAVMVNQGAARAAQGVSATILYYNDLLEYETGLPGVDFGRAEGTAVGFSFFSHSIY  179
1e6yb.pdb             121  VGTLAATLVNCGAGRAAQNVSSTLLYFNDILEKETGLPGCDYGKVEGTAVGFSFFSHSIY  180
1mrob.pdb             120  AGLMAATMVNQGAARAAQGVSSTLLYYNDLIEFETGLPSVDFGKVEGTAVGFSFFSHSIY  179
                           aGl AAtmVNqGAaRAAQgVSsTlLYyNDllE ETGLPgvDfGkvEGTAVGFSFFSHSIY

1e6vb.pdb             180  GGGGPGIFHGNHIVTRHSKGFAIPPVAAAMALDAGTQMFSPEVTSKLIGDVFGEIDEFRE  239
1e6yb.pdb             181  GGGGPGVFNGNHVVTRHSRGFAIPCVCAAVALDAGTQMFSIESTSGLIGDVFGAIPEFRE  240
1mrob.pdb             180  GGGGPGIFNGNHIVTRHSKGFAIPCVAAAMALDAGTQMFSPEATSGLIKEVFSQVDEFRE  239
                           GGGGPGiFnGNHiVTRHSkGFAIPcVaAAmALDAGTQMFSpE TSgLIgdVFg idEFRE

1e6vb.pdb             240  PMKYITEAAAEEAK--  253
1e6yb.pdb             241  PIKAVAGV--------  248
1mrob.pdb             240  PLKYVVEAAAEIKNEI  255
                           P Kyv ea        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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