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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:56:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lipase_3.html
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#====================================
# Aligned_structures: 3
#   1: 1lgya.pdb
#   2: 1tib.pdb
#   3: 3tgl.pdb
#
# Length:        289
# Identity:       60/289 ( 20.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    175/289 ( 60.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/289 ( 15.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lgya.pdb               1  KVVAATTAQIQEFTKYAGIAATAYCRSVVPGNKWD--------CVQ--CQKWVPDGKIIT   50
1tib.pdb                1  ---EVSQDLFNQFNLFAQYSAAAYCGKNNDAPA--GTNITCTGNACPEVEK-AD-ATFLY   53
3tgl.pdb                1  GIRAATSQEINELTYYTTLSANSYCRTVIPGATWD--------CIH--CD-ATEDLKIIK   49
                              aat   ineft ya  sA aYCr v pg            c    c       kii 

1lgya.pdb              51  TFT-SLLSDTNGYVLRSDKQKTIYLVFRGTNSFRSAITDIVFNFSDY-KPVKGAKVHAGF  108
1tib.pdb               54  SFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGF  113
3tgl.pdb               50  TWS-TLIYDTNAMVARGDSEKTIYIVFRGSSSIRNWIADLTFVPVSY-PPVSGTKVHKGF  107
                           tf  sl  Dtng var d  KtIylvFRGs SirnwI dl F    y  pvsG kvH GF

1lgya.pdb             109  LSSYEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPK-NLS  167
1tib.pdb              114  TSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRG------NGYDID  167
3tgl.pdb              108  LDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSS-NLF  166
                           lsSy  V n l   V dq   hP YkV vTGHSLGGA allag DLyq         nl 

1lgya.pdb             168  IFTVGGPRVGNPTFAYYVES-TGIPFQRTVHKRDIVPHVPPQSFGFLHPGVESWIKSG--  224
1tib.pdb              168  VFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSG--  225
3tgl.pdb              167  LYTQGQPRVGDPAFANYVVS-TGIPYRRTVNERDIVPHLPPAAFGFLHAGEEYWITDNSP  225
                            ft G PRVGnpaFA yv s TGip  Rtvh rDIVPhlPP  FGflH g EyWIksg  

1lgya.pdb             225  T------SNVQICTSE-IETKDCSNSIVPFTSILDHLSYFDINEGSCL-  265
1tib.pdb              226  TLVPVTRNDIVKI-E-GIDATGGNNQP-NIPDIPAHLWYFGLIGT-C-L  269
3tgl.pdb              226  -------ETVQVCTSD-LETSDCSNSIVPFTSVLDHLSYFGINTGLCT-  265
                                    vq c s  iet dcsNsi pftsildHLsYFgin g C  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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