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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:48:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LIM.html
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#====================================
# Aligned_structures: 5
#   1: 1a7i.pdb
#   2: 1b8ta1.pdb
#   3: 1ctl.pdb
#   4: 1iml.pdb
#   5: 1qli.pdb
#
# Length:         98
# Identity:       17/ 98 ( 17.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/ 98 ( 27.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/ 98 ( 40.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a7i.pdb                1  ------------NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAE   48
1b8ta1.pdb              1  -----MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDE   55
1ctl.pdb                1  MAQKV---G-GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGE   56
1iml.pdb                1  ------------PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGK   48
1qli.pdb                1  -----------AEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGE   49
                                        kC  C   VY AE V   G   H  Cf C  C K L Stt a    e

1a7i.pdb               49  VYCKSCYG-KKYG-------------------------   60
1b8ta1.pdb             56  IYCKSCYGKKYGPK------------------------   69
1ctl.pdb               57  IYCKGCYA-KNFGPKGF--GFGQGAGALIHSQ------   85
1iml.pdb               49  PYCNHPCYSAMFGPKGFGRGGA----------ESHTFK   76
1qli.pdb               50  IYCKGCYA-KN---------------------------   59
                            YCk cy  k                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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