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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:55:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LBP_BPI_CETP.html
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#====================================
# Aligned_structures: 2
#   1: 1bp11.pdb
#   2: 1bp12.pdb
#
# Length:        295
# Identity:       12/295 (  4.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     12/295 (  4.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          134/295 ( 45.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bp11.pdb               1  V---------------------------------NPGVVVRISQKGLDYASQQGTAALQK   27
1bp12.pdb               1  -ETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQE----   55
                                                                V    S      A          

1bp11.pdb              28  ELKRIKIPDYSDSFKI-----------------------KHLGKGHYSFYSMDIREFQLP   64
1bp12.pdb              56  AG-V---LKMTLRD-DMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIH-VSA----ST  105
                                                                  K                    

1bp11.pdb              65  SSQISMVPNVGLKFSISNANIKISGKWKAQKR--F-LKM-SGNFDLSIEGMSISADLKLG  120
1bp12.pdb             106  PPHLSVQPT--------GLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSA----  153
                               S  P                    A                    G          

1bp11.pdb             121  SNPT-SGKPT--ITCSSCSSHINSVH--VHISKSK-VGWLIQLFHKKIESALRNKMNSQV  174
1bp12.pdb             154  ----ESNRLVGELKLDRLLLELKHSNIGPFPVEL-LQDIMNYIVPILVLPRVNEKLQKG-  207
                                S                                                K     

1bp11.pdb             175  CEKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTA------------  217
1bp12.pdb             208  ------------------FPLPTPA----RVQLY-NVVLQPHQNFLLFGADVVYK  239
                                              P  T                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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