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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:50:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/IU_nuc_hydro.html
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#====================================
# Aligned_structures: 2
#   1: 1ezra.pdb
#   2: 2masa.pdb
#
# Length:        313
# Identity:      246/313 ( 78.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    246/313 ( 78.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            1/313 (  0.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ezra.pdb               1  PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGV   60
2masa.pdb               1  AKKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGV   60
                             KIILDCDPG DDAVAI LAHGNPEIELLAITTVVGNQ L KVT NA LVAD AGI GV

1ezra.pdb              61  PVAAGCTKPLVRGVRNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKTI  120
2masa.pdb              61  PIAAGCDKPLVRKIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTI  120
                           P AAGC KPLVR    A HIHGE GMG V YP EFK K D RHAV LIIDL MSHEPKTI

1ezra.pdb             121  TLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHTGNASPVAEFNVFIDPEAAHIVFN  180
2masa.pdb             121  TLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNATSVAEFNIIIDPEAAHIVFN  180
                           TLVPTGGLTNIAMA RLEPRIVDRVKEVVLMGGGYH GNA  VAEFN  IDPEAAHIVFN

1ezra.pdb             181  ESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHD-TYGKVH  239
2masa.pdb             181  ESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVH  240
                           ESW VTMVGLDLTH ALATP    RV EV T PA FML I D YTK Y          VH

1ezra.pdb             240  DPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVADFRYPRPKNCRTQVAVKLDFDKFW  299
2masa.pdb             241  DPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNPRPEHCHTQVAVKLDFEKFW  300
                           DPCAVAYVIDP VMTTERVPVDIEL G LT GMTVADFR PRP  C TQVAVKLDF KFW

1ezra.pdb             300  CLVIDALERIGDP  312
2masa.pdb             301  GLVLDALERIGDP  313
                            LV DALERIGDP


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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