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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:44:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/IMS.html
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#====================================
# Aligned_structures: 2
#   1: 1im4a.pdb
#   2: 1jx4a.pdb
#
# Length:        210
# Identity:      122/210 ( 58.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    122/210 ( 58.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/210 (  7.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1im4a.pdb               1  HHHHHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYST----SGAVATANYEARKLGVK   56
1jx4a.pdb               1  -----IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVK   55
                                IV FVDFDYF AQVEEVLNP  KGKP VVCV S     SGAVATANYEARK GVK

1im4a.pdb              57  AGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVE  116
1jx4a.pdb              56  AGIPIVEAKKILPNAVYLP-RKEVYQQVSSRI-NLLREYSEKIEIASIDEAYLDISDKV-  112
                           AG PI  A  I P A Y P RK  Y   S RI NLL     KIE ASIDEAYLD   KV 

1im4a.pdb             117  GN-FENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDF  175
1jx4a.pdb             113  -RDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD-AKPNGIKVIDDEEVKRL  170
                                    L   IK  ILEKEKITVTVG   NK  AKI AD  KPNG  VI   EV   

1im4a.pdb             176  LNELDIDEIPGIGSVLARRLNELGIQKLRD  205
1jx4a.pdb             171  IRELDIADVPGIGNITAEKLKKLGINKLVD  200
                             ELDI   PGIG   A  L  LGI KL D


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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