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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:43:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/IMPDH.html
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#====================================
# Aligned_structures: 2
#   1: 1ak5.pdb
#   2: 1b3oa.pdb
#
# Length:        356
# Identity:       98/356 ( 27.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     98/356 ( 27.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           79/356 ( 22.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ak5.pdb                1  AKY----------------YNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQ   44
1b3oa.pdb               1  ---TSYVPDDGLTAQQLFNC-GDGLTYNDFLILPGYID-F-TADQVDLTSALT-------   47
                                                    T N  L  PG          V L   L        

1ak5.pdb               45  SEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNFKA--HN  102
1b3oa.pdb              48  KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVK----DYPL  103
                             I LK PLVS  M  V    MAIA A  GGI FI      E QA  V  VK        

1ak5.pdb              103  ELVDSQKRYLVGAGINTR-DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYG  161
1b3oa.pdb             104  ASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYP  163
                              D  K  L GA I T  D   R   L  AG DV   DSS G S  Q   I  I  KY 

1ak5.pdb              162  DKVKVGAGNIVDGEGFRYLADAGADFIKIGIG--RGQATAVIDVVAERNKYFEETGIYIP  219
1b3oa.pdb             164  -NLQVIGGNVVTAAQAKNLIDAGVDALRVGM-GSRPQATAVYKVSEYAR--R----FGVP  215
                               V  GN V       L DAG D    G    R QATAV  V               P

1ak5.pdb              220  VCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRGV  279
1b3oa.pdb             216  VIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPG----------------------  253
                           V  DGGI    H   ALA GA   M G   A   E P                       

1ak5.pdb              280  DSYVP-YAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKA-----KITLVSSVSI  329
1b3oa.pdb             254  -----EDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQ  304
                                   G     V              GA    Q          K     S   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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