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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:34:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Hint.html
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#====================================
# Aligned_structures: 2
#   1: 1am2.pdb
#   2: 1at0.pdb
#
# Length:        189
# Identity:       19/189 ( 10.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/189 ( 10.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/189 ( 29.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1am2.pdb                1  ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLD---RHGNPVLADRLFHSGEH   57
1at0.pdb                1  -CFTPESTALLESGVRKPLGELS----------IGDRVLSTANGQAVYSEVILFDRNLEQ   49
                              T      L  G                   I   VL                   E 

1am2.pdb               58  -PVYAVRTVEGLRVTGTANHPLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQRS-AFSTVG  115
1at0.pdb               50  QNFVQLHTDGGAVLTVTPAHLVSVWQP--ESQKLTFVFADRIEEKNQVLVRDVET-----  102
                                  T  G   T T  H             L     D I                  

1am2.pdb              116  VPGLVRFLEAHHRDPDAKAIADELTDG-RFYYAKVASVTDAGVQPVYSLRVDTADHAFIT  174
1at0.pdb              103  ---------------------------GELRPQRVVKVGSVRSKGVVAPLTRE--GTIVV  133
                                                             V  V       V              

1am2.pdb              175  NGFVSHN--  181
1at0.pdb              134  NSVAASCYA  142
                           N        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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