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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:23:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ham1p_like.html
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#====================================
# Aligned_structures: 2
#   1: 1k7ka.pdb
#   2: 2mjpa.pdb
#
# Length:        214
# Identity:       58/214 ( 27.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/214 ( 27.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/214 ( 18.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k7ka.pdb               1  SSGRENLYFHQKVVLATGNVGKVRELASLLSDFG-LDIVAQTDLGVDSAEETGLTFIENA   59
2mjpa.pdb               1  -----------KIYFATGNPNKIKEANIILKDLKDVEIEQIK-ISYP---EIQGTLEEVA   45
                                      K   ATGN  K  E    L D     I            E   T  E A

1k7ka.pdb              60  ILKARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQK----NLQKLLETK  115
2mjpa.pdb              46  EFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFV---------QETIGNEGILKLL   96
                              A         P I  DSG  V  L G PG YS                     L   

1k7ka.pdb             116  -DVPDDQRQARFHCVLVYLR-HAEDPTPLVCHGSWPGVITREPAG-TGGFGYDPIFFVPS  172
2mjpa.pdb              97  EG--KDNRNAYFKTVIGYCDEN----GVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEE  150
                                D R A F  V  Y              G   G    E      GF YD IF    

1k7ka.pdb             173  EGKTAAELTREEKSAISHRGQALKLLLDALRNG-  205
2mjpa.pdb             151  EERTFAEMTTEEKSQISHRKKAFEEFKKFLLDRI  184
                           E  T AE T EEKS ISHR  A       L    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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