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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:35:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HMA.html
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#====================================
# Aligned_structures: 3
#   1: 1cpza.pdb
#   2: 2aw0.pdb
#   3: 2hqi.pdb
#
# Length:         76
# Identity:       11/ 76 ( 14.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/ 76 ( 46.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            8/ 76 ( 10.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cpza.pdb               1  ------AQEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEI   54
2aw0.pdb                1  LTQ---ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETL   57
2hqi.pdb                1  ---ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKL   57
                                      v GMtCn Cv  ie a sk  GVkkv V l k  avV fD    s   l

1cpza.pdb              55  CQAINELGYQAEVI--   68
2aw0.pdb               58  RGAIEDMGFDATLSD-   72
2hqi.pdb               58  TKATADAGYPSSVK-Q   72
                             Ai d Gy a v   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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