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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:29:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GroEL.html
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#====================================
# Aligned_structures: 2
#   1: 1a6da.pdb
#   2: 1oela.pdb
#
# Length:        262
# Identity:       64/262 ( 24.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/262 ( 24.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           28/262 ( 10.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a6da.pdb               1  ----REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMD   56
1oela.pdb               1  AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE   60
                                  G  A           ADAV  TLGPKG    L  S G   I  DG     E  

1a6da.pdb              57  V-----EHPTAKMIVEVSKAQDTAVG--DGTTTAVVLSGELLKQAETLLDQGVHPTVISN  109
1oela.pdb              61  LEDKFEN-MGAQMVKEVASKA-NDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKR  117
                                     A M  EV           DGTTTA VL              G  P     

1a6da.pdb             110  GYRLAVNEARKIIDEIAEKS-FLWGGGAVEAELAMRLAKYANS-VGGREQLAIEAFAKAL  167
1oela.pdb             118  GIDKAVTVAVEELKALSV--GVVAGGGVALIRVASKLADLR--GQNEDQNVGIKVALRAM  173
                           G   AV  A               GGG      A  LA              I     A 

1a6da.pdb             168  EIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHA  227
1oela.pdb             174  EAPLRQIVLNCGEEPSVVANTVKGGD----GNYGYNAATEEYGNMIDMGILDPTKVTRSA  229
                           E   R    N G  P       K  D       G        G M   G  DP  V   A

1a6da.pdb             228  LESAVEVATMILRIDDVI----  245
1oela.pdb             230  LQYAASVAGLMITTECMVTDLP  251
                           L  A  VA              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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