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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:23:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_transf_8.html
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#====================================
# Aligned_structures: 2
#   1: 1ga8a.pdb
#   2: 1ll3a.pdb
#
# Length:        312
# Identity:       41/312 ( 13.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/312 ( 13.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           92/312 ( 29.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ga8a.pdb               1  ----DIV-FAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDA-GISEANRAAVAANLRGG   54
1ll3a.pdb               1  MTDQAFVTLTTNDAYAKGALVLGSSLKQHRT--SRRLAVLTTPQVSDTMRKALEIVFD--   56
                                 V     D YA    V   S          R  VL     S   R A        

1ga8a.pdb              55  GGNIRFIDVNPEDF----AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDS  110
1ll3a.pdb              57  ---EVITVDI-LDSGDSAHLTLMKRPEL-GVTLTKLHCWS-LTQYSKCVFMDADTLVLAN  110
                                       D                  T   L          K    D D LV   

1ga8a.pdb             111  LTPLWDTDLGDNW-LGASIDLFVERQEGYKQKIGADGE-YYFNAGVLLINLK-KWRRHDI  167
1ll3a.pdb             111  IDDLFER-E----ELSAAPDPG-W--------------PDCFNSGVFVYQPSVETY----  146
                              L          L A  D                     FN GV              

1ga8a.pdb             168  FKSSEWVEQYKDVQ---YQDQDILNGLFKGGV-----CYANSRFNFP-TNYAFASRHT-D  217
1ll3a.pdb             147  NQLLHVASEQG---SFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYS-----YL  198
                                              DQ  LN  F                N               

1ga8a.pdb             218  PLYRDRTNTVPVAVSHYCGPAKPWHR-DCTA-----------W---GAERFTELAGSLTT  262
1ll3a.pdb             199  PAFKAFGA--NAKVVHFLGQTKPWNYTY---DTKTKSVRSEMTHPQFLNVWWDIFTTSV-  252
                           P            V H  G  KPW                                    

1ga8a.pdb             263  V---PEEWRGKL  271
1ll3a.pdb             253  -VPLLQQFGL--  261
                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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