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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:21:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_transf_6.html
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#====================================
# Aligned_structures: 2
#   1: 1k4va.pdb
#   2: 1lzja.pdb
#
# Length:        301
# Identity:      110/301 ( 36.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    110/301 ( 36.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           52/301 ( 17.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k4va.pdb               1  KLKLS---------DWFNP--FKRPEVVTMTKWKAPVVWEGTYNRAVLDNYYAKQKITVG   49
1lzja.pdb               1  -----MVSLPRMVYPQPKVLTPCRKDVLVVTPWLAPIVWEGTFNIDILNEQFRLQNTTIG   55
                                                  R  V   T W AP VWEGT N   L      Q  T G

1k4va.pdb              50  LTVFAVGRYI--EHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFK  107
1lzja.pdb              56  LTVFAIK---KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLE  112
                           LTVFA          L  FL  A KHFMVGH V  Y   D     P   LG  R   V  

1k4va.pdb             108  IKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGESVAQLQA  167
1lzja.pdb             113  VG--------------------ERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHP  152
                                                       EVD L C DVD  F D  GVE L      L  

1k4va.pdb             168  WWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKN  227
1lzja.pdb             153  SFYGSSREAFTYERRPQSQAYIPKDEGDFYYMGAFFGGSVQEVQRLTRACHQAMMVDQAN  212
                             Y      FTYERR  S AYIP  EGDFYY  A FGG    V   T  C      D  N

1k4va.pdb             228  DIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYH-IGLPADIKLVKMSWQTKEYNVVRNN  286
1lzja.pdb             213  GIEAVWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAVLRKLRFTAVP---------  263
                            IEA WHDESHLNKY L  KPTK LSPEY WD    G PA                    

1k4va.pdb             287  V  287
1lzja.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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