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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:20:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_transf_28.html
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#====================================
# Aligned_structures: 2
#   1: 1f0ka.pdb
#   2: 1iira.pdb
#
# Length:        420
# Identity:       50/420 ( 11.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     50/420 ( 11.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          107/420 ( 25.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f0ka.pdb               1  KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEA-DLVPKHGIEIDFI-RIS   58
1iira.pdb               1  MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPD---CAERLAEVGVPHVPVGP--   55
                            R      G  G   P  A A      G  VR     D           G          

1f0ka.pdb              59  GLR---GKGIKALIAAPLRIFNAWRQARAIMKAY-K-PDVVLGMGG-YVSGPGGLAAWSL  112
1iira.pdb              56  ---RAKPLTAED---VRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKL  109
                                                 A         A       V   G           A  L

1f0ka.pdb             113  GIPVVLHEQNGIA-------------------------GLTNKWLAKIATK---------  138
1iira.pdb             110  GIPYFYAFHCPSYVPSPYYPPPPIDIPAQWERNNQSAYQRYGGLLNSHR--DAIGLPPVE  167
                           GIP                                         L               

1f0ka.pdb             139  ----------VMQAFPG-AF------PNAEVVGNPV-RTDVLALPLPQQRLAG-REGPVR  179
1iira.pdb             168  DIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILP---DERPLSPELAAFLDAGPPP  224
                                        A              A   G           PL     A    GP  

1f0ka.pdb             180  VLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEA------GQPQH  233
1iira.pdb             225  VYLG-F-GAPADAVRVAIDAIRAHG--RRVILS--RGWA----------DLVLPDDGADC  268
                           V                       G           G                       

1f0ka.pdb             234  KVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKA  293
1iira.pdb             269  FAIGEV-NHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQ-M--ADQPYYAGRVAEL  324
                                             V    GA T    A AG P    P       Q   A      

1f0ka.pdb             294  GAAKIIEQP-QLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARAL-  351
1iira.pdb             325  GVGVAHDG-PIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR-E  382
                           G             D     LA          A         D     A           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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