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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:20:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_20b.html
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#====================================
# Aligned_structures: 2
#   1: 1hp5a.pdb
#   2: 1qba.pdb
#
# Length:        162
# Identity:       22/162 ( 13.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     22/162 ( 13.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/162 ( 27.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hp5a.pdb               1  DRKAP----VRPTPLD----RVIPAPASVDPGGAPYRITRGTHIRVD-DSREARRVGDYL   51
1qba.pdb                1  -----SNADLQTLPAGALRGKIVPTPMQVKVHAQDADLRKGVALDLSTL---VKPAADVV   52
                                        P         P P  V           G                D  

1hp5a.pdb              52  ADLLRPATGYRLPVTAHGHG----GIRLRLAGGP------YGDEGYRLDSGPAGVTITAR  101
1qba.pdb               53  SQRFALLG-VPVQ-------TNGYPIKTDIQP-GKFKGAMAVSGAYELKIGKKEAQVIGF  103
                                                    I                   Y L  G         

1hp5a.pdb             102  KAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPR  143
1qba.pdb              104  DQAGVFYGLQSILSLVPSD--------GSGKIATLDASDAPR  137
                             AG F G Q    L P          G    A     D PR


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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