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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:31:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_18_D2.html
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#====================================
# Aligned_structures: 4
#   1: 1d2ka.pdb
#   2: 1e15a.pdb
#   3: 1e9la.pdb
#   4: 1edqa.pdb
#
# Length:        104
# Identity:        4/104 (  3.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     15/104 ( 14.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/104 ( 46.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2ka.pdb               1  YGRAFAST-----D-------GIGTSFNGVG--------------------GGS---WEN   25
1e15a.pdb               1  YGRAFKGV-----SGG---NGGQYSSHSTPGEDPYPSTDYWLVGCEECVRD------KDP   46
1e9la.pdb               1  YGHTFIL-SDPSKT-------GIGAPTISTG--------------------PPGKYTDES   32
1edqa.pdb               1  YGRGWTGV-----NG-YQNNIPFTGTATGPV--------------------KGT---WEN   31
                           YGr f                g        g                           e 

1d2ka.pdb              26  GVWDYKDM----PQ--QGAQVTELEDIAASYSYDKNKRYLISY-   62
1e15a.pdb              47  RIASYRQLE-QMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTY-   88
1e9la.pdb              33  GLLAYYEVC-TFLN--EGATEVWDAPQEVPYAYQGN--EWVGYD   71
1edqa.pdb              32  GIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDLITFD   73
                           g   Y            g q         pY y         y 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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