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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:06:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GFP.html
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#====================================
# Aligned_structures: 2
#   1: 1gfla.pdb
#   2: 1ggxa.pdb
#
# Length:        237
# Identity:       47/237 ( 19.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     47/237 ( 19.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/237 ( 12.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gfla.pdb               1  ASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTT-GKLPVPWPT   59
1ggxa.pdb               1  ------VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDI   54
                                          V   G VNGH F   GEGEG    G  T K   T  G LP  W  

1gfla.pdb              60  LVTTFYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLV  119
1ggxa.pdb              55  LSPQF--SKVYVKHPADI--PDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFI  110
                           L   F         P      D  K   PEG   ER   F D G                

1gfla.pdb             120  NRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLAD  179
1ggxa.pdb             111  YKVKFIGVNFPSDGPVMQKKTMG-WEASTERLYPR-D-GVLKGEIHKALKLKDGGHYLVE  167
                                 G  F  DG     K                     K          DG   L  

1gfla.pdb             180  HYQQNTPIGDGPVLLPDNHYLSTQSALSK-DPNEKR---DHMVLLEFVTAAGIT---  229
1ggxa.pdb             168  FKSIYMAKKP--VQLPGYYYVDSKLDITSHN-----EDYTIVEQYERTEGRHH-LFL  216
                                       V LP   Y                         E           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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