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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:09:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GATase_2.html
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#====================================
# Aligned_structures: 3
#   1: 1ao0a.pdb
#   2: 1ecfa.pdb
#   3: 1gdoa.pdb
#
# Length:        536
# Identity:       37/536 (  6.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    118/536 ( 22.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          325/536 ( 60.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ao0a.pdb               1  CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDG-EKLTAHKGQGLITEVF-QNG-   57
1ecfa.pdb               1  CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEA--R   58
1gdoa.pdb               1  CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLA-QA--   57
                           CGivGi g   v qi y gL  LqhRGqd AGi   Da    t  k  Glv  vf q   

1ao0a.pdb              58  ELS-KVKGKGAIGHVRYATGYE---------NVQPLLFRSQNNGSLALAHNGNLVNATQL  107
1ecfa.pdb              59  HMQ-RLQGNMGIGHVRYPT-AGS----SSASEAQPFYVNS--PYGITLAHNGNLTNAHEL  110
1gdoa.pdb              58  AEEHPLHGGTGIAHTRWAT-HGEPSEV----NAHPHVSE-----HIVVVHNGIIENHEPL  107
                                l G  gIgHvRyaT  g         naqP          i laHNGnl Na  L

1ao0a.pdb             108  KQQLEN-QGSIFQTSSDTEVLAHLIKRS--GH--F-----TLKDQIKNSLSMLKGAYAFL  157
1ecfa.pdb             111  RKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACV  170
1gdoa.pdb             108  REELKA-RGYTFVSETDTEVIAHLVNWELKQG--G-----TLREAVLRAIPQLRGAYGTV  159
                           r  L    g  f t sDtEvlahl   e            tl  ai      lrGAYa v

1ao0a.pdb             158  IMT--E-TEMIVALDPNGLRPLSIGMMG-----DAYVVASETCAFDVVGATYLREVEPGE  209
1ecfa.pdb             171  AMII-G-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGE  228
1gdoa.pdb             160  IMDSRHPDTLLAA-R--SGSPLVIGLGM-----GENFIASDQLALLP-VTRRFIFLEEGD  210
                           iM       m aa d  g rPLviG         ey vASe  Ald  g   lr vepGe

1ao0a.pdb             210  MLIIN-DEGMKSERF---------SMNINRSICSMEYIYFSRPDSNIDGINVHSARKNLG  259
1ecfa.pdb             229  AIYITEEGQLFTRQC---------ADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMG  279
1gdoa.pdb             211  IAEIT-RRSVNIFDKTGAEVKRQD------------------------------------  233
                              It                                                       

1ao0a.pdb             260  KMLAQESA-----VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGR-------  307
1ecfa.pdb             280  TKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQ  339
1gdoa.pdb             234  ------------------------------------------------------IESNL-  238
                                                                                       

1ao0a.pdb             308  TFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHV  367
1ecfa.pdb             340  QLRRKSV-------RRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYL  392
1gdoa.pdb                  ------------------------------------------------------------     
                                                                                       

1ao0a.pdb             368  KISSPPIAHPCFYGIDTSTHE----ELIASSHSVEEIRQEIGADTLSFLSVEGLLKGIGR  423
1ecfa.pdb             393  ASAAPEIRFPNVYG----IDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVR-  447
1gdoa.pdb                  ------------------------------------------------------------     
                                                                                       

1ao0a.pdb             424  KYDDSN------CGQCLACFTGKYPTEI-YQDTVLPHVK-----------------  455
1ecfa.pdb             448  ------AENPDIQQFECSVFNGVYVTKDVDQGYL-----DFLDTLRNDDAKAVQRQ  492
1gdoa.pdb                  --------------------------------------------------------     
                                                                                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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