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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:46:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GAF.html
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#====================================
# Aligned_structures: 3
#   1: 1f5ma.pdb
#   2: 1mc0a1.pdb
#   3: 1mc0a2.pdb
#
# Length:        207
# Identity:        7/207 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     47/207 ( 22.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           84/207 ( 40.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f5ma.pdb               1  -------------------------------------DVSVLLQEIITEARNLSN-----   18
1mc0a1.pdb              1  -------------------------------------DATSLQLKVLQYLQQETQ-----   18
1mc0a2.pdb              1  STGFHHADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVD   60
                                                                d   ll                 

1f5ma.pdb              19  AEICSVFLLD----QNELVAKVFDGG-VVDDESYEIRIPADQGIAGHVATTGQILNIPDA   73
1mc0a1.pdb             19  ATHCCLLLVSE-D-NLQLSCKVIGDK-VLG---EEVSFPLTMGRLGQVVEDKQCIQ-LKD   71
1mc0a2.pdb             61  INWAGFYVTQASEEN-TLILGPFQGKV--A---C-QMIQFGKGVCGTAASTKETQIVPDV  113
                           a  c   l      n  L  kvf gk           ip   G  G va tkq    pd 

1f5ma.pdb              74  YAHPLF-YRGVDDS-TGFRTRNILCFPIKNE-NQEVIGVAELVN-KINGPWFSKFDEDLA  129
1mc0a1.pdb             72  --LTS-DDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFN-KLGGDFFTDEDEHVI  127
1mc0a2.pdb            114  NKYPGH-IAC-----DG-ETKSEIVVPIISN-DGKTLGVIDIDCL--DYEGFDHVDKEFL  163
                              p            G et   lcvPiis     v gva   n    g  F   De   

1f5ma.pdb             130  TAFSIYCGISIA-HSLLYKKVNEAQY-  154
1mc0a1.pdb            128  QHCFHYTGTVLT--------------S  140
1mc0a2.pdb            164  EKLAKLINKSCVF--------------  176
                                y g s                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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