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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:58:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fimbrial.html
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#====================================
# Aligned_structures: 2
#   1: 1pdkb.pdb
#   2: 1qunb.pdb
#
# Length:        171
# Identity:       13/171 (  7.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     13/171 (  7.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           72/171 ( 42.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pdkb.pdb               1  LLDRPCHVSGDSLN--------KHVVFKTRASRDFWYPPG-RSPTESFVIRLENCHATAV   51
1qunb.pdb               1  --------------GGCDVSARDVTVTLP-----------DYPGSVPIPLTVYC------   29
                                                    V                                  

1pdkb.pdb              52  GK----IVTLTFKGTEEAAL-PGHLKVTGVNA-----GRLGIALLDTDGSSLLKPGTSHN  101
1qunb.pdb              30  --AKSQNLGYYLSGTTAD-AGNSIFTNTA---SFSPAQGVGVQLTR--NGTIIPANNTVS   81
                                        GT            T            G  L                

1pdkb.pdb             102  K-GQGEKVTG-NSLELPFGAYVVAT-PEALRTKSVVPGDYEATATFELTYR  149
1qunb.pdb              82  LGA-----VGTSAVSLGLTANYARTGG------QVTAGNVQSIIGVTFVYQ  121
                                    G     L   A    T         V  G           Y 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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