################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:47:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fapy_DNA_glyco.html
################################################################################################
#====================================
# Aligned_structures: 4
#   1: 1ee8a.pdb
#   2: 1k82a.pdb
#   3: 1kfva.pdb
#   4: 1l1za.pdb
#
# Length:        286
# Identity:       58/286 ( 20.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    110/286 ( 38.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/286 ( 15.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ee8a.pdb               1  PELPEVETTRRRLRPLVLGQTLRQVVHRDPAR-YR-------NTALAEGRRILEVDRRGK   52
1k82a.pdb               1  PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWP--V-S-EEIYRLSDQPVLSVQRRAK   56
1kfva.pdb               1  GELPEVETVRRELEKRIVGQKIISIEATYPRVL----TGFEQLKKELTGKTIQGISRRGK   56
1l1za.pdb               1  PELPEVETIRRTLLPLIVGKTIEDVRIFWPNI-IRHPRDSEAFAARMIGQTVRGLERRGK   59
                           pELPEVET RR l p  vG ti       p                  g       RRgK

1ee8a.pdb              53  FLLFALEGGV-ELVAHLGMTGGFR-L----EPTPHTRAALVL-EGRTLYFHDPRRFGRLF  105
1k82a.pdb              57  YLLLELPE-G-WIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWL  114
1kfva.pdb              57  YLIFEIGD-DFRLISHLR-EGKYRLATLDAPREKHDHLT-KF-ADGQLIYADVRKFGTWE  112
1l1za.pdb              60  FLKFLLDR-D-ALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMH  117
                            L f l      li HL   G  r      p e H h       g  L y D R FG   

1ee8a.pdb             106  GVRRG---DYREIPLL-LRLGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGN  161
1k82a.pdb             115  WTKEL--EGH---NVL-THLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGN  168
1kfva.pdb             113  LISTDQVL-P---YFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGN  168
1l1za.pdb             118  VYAKEEADRR---PPL-AELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGN  173
                                          L   lGPEPls  F          k     K  Lldq lvaG GN

1ee8a.pdb             162  IYADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEAVELGGSTLSDQSYRQPDGL-  220
1k82a.pdb             169  IYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTL----------K-  217
1kfva.pdb             169  IYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSI-----------S  217
1l1za.pdb             174  IYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTV------------  221
                           IY dE Lf A i P r a sL   e   L       l  a   GGst             

1ee8a.pdb             221  PGGFQTRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQGEGP  266
1k82a.pdb             218  PGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK---  260
1kfva.pdb             218  TG-KQNELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK--  260
1l1za.pdb             222  -GTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR---  263
                            G fq  l VYGr G pC  CG pi    vAgRgTh Cp CQ    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################