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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:13:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/F_bP_aldolase.html
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#====================================
# Aligned_structures: 2
#   1: 1dosa.pdb
#   2: 1gvfa.pdb
#
# Length:        367
# Identity:       63/367 ( 17.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/367 ( 17.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          103/367 ( 28.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dosa.pdb               1  SKIFDFVKPGVITGD---DVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVI   57
1gvfa.pdb               1  ---------------SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVI   45
                                                   Q A  N  A PA N      I A LE       PVI

1dosa.pdb              58  VQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLL-  116
1gvfa.pdb              46  LAGTPGTFKHI----------------ALEEIYALCSAYSTTYNMPLALHLDHHE---SL   86
                                G    I                               Y  P  LH DH       

1dosa.pdb             117  PWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELG  176
1gvfa.pdb              87  DDIRRKVHA-----------GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELG  135
                             I     A              S MID S     EN                  E ELG

1dosa.pdb             177  CTGGEEDGVDNSH-MDASALYTQPEDVDYAYTELSKISPR-FTIAASFGNVHGVYKAGNV  234
1gvfa.pdb             136  -------------RLG-SAFLTDPQEAKRFVELTG-----VDSLAVAIGTAH-GLYSKTP  175
                                            SA  T P                    A   G  H        

1dosa.pdb             235  VLTPTILRDSQEYVSKKHNLPHN-SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQW  293
1gvfa.pdb             176  KIDFQRLAEIRE-V---------VDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI  225
                                 L    E V              V HG S             GV K N  T    

1dosa.pdb             294  ATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKY-YDPRVWLRAGQTSMIARLEKAFQEL  352
1gvfa.pdb             226  AFAGAVKAWFAENP-Q------------------GNDPRYYMRVGMDAMKEVVRNKINVC  266
                           A    V      N                       DPR   R G   M           

1dosa.pdb             353  NAIDVL-  358
1gvfa.pdb             267  GSANRIS  273
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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