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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:49:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD_binding.html
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#====================================
# Aligned_structures: 2
#   1: 1f20a.pdb
#   2: 1ja0a.pdb
#
# Length:        298
# Identity:       69/298 ( 23.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     69/298 ( 23.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/298 ( 18.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f20a.pdb               1  SWK--RNKFRLTYVAEAPDLTQGLS--NVHK-------------KRVSAARLLSRQNLQS   43
1ja0a.pdb               1  ---SSIRQYELVVHEDMDV-AKVY-TGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQ   55
                                     L                                 K    A       L  

1f20a.pdb              44  PKS-SRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVE  102
1ja0a.pdb              56  --GTERHLMHLELDISDSK-IRYESGDHVAVYPANDSALVNQIGEILG-A-DLDVIMSLN  110
                                R      L         Y  GDH  V P N   LVN   E L  A          

1f20a.pdb             103  MLEERNTALGVISNWKDES-----RLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNE  157
1ja0a.pdb             111  NLD--EES-----------NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEP  157
                            L                         P T   A  YYLDIT PP    L   A  A   

1f20a.pdb             158  KEKQRLLVLSKG----LQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYY  213
1ja0a.pdb             158  SEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYY  217
                            E   L             Y  W           L   PS   P   L   L  LQ RYY

1f20a.pdb             214  SISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP-  270
1ja0a.pdb             218  SIASSSKVHPNSVHICAVAVEYEAK-S-GRVNKGVATSWLRAKEPALVPM-FVRKSQF  272
                           SI SS    P  VH     V Y      G V  GV  SWL       V   FVR    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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