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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:48:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/F5_F8_type_C.html
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#====================================
# Aligned_structures: 2
#   1: 1czta.pdb
#   2: 1d7pm.pdb
#
# Length:        163
# Identity:       66/163 ( 40.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/163 ( 40.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/163 (  4.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1czta.pdb               1  --GCSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAKANNNKQW   58
1d7pm.pdb               1  LNSCSMPLGMESKAISDAQITASSYFTN-MFATWSPSKARLHLQGRSNAWRPQVNNPKEW   59
                              CS PLGME   I   QITASS         W P  ARL  QGR NAW    NN K W

1czta.pdb              59  LEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQGVEWKPYRLKSSMV-DKIFEGN  117
1d7pm.pdb              60  LQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQN-G--KVKVFQGN  116
                           L  D  K  K T   TQG KSL   MYVK   I  S  G  W            K F GN

1czta.pdb             118  TNTKGHVKNFFNPPIISRFIRVIPKTWNQSITLRLELFGCDIY  160
1d7pm.pdb             117  QDSFTPVVNCLDPPLLTRYLRIHPQSWVHQIALRMEVLGCEAQ  159
                                 V N   PP   R  R  P  W   I LR E  GC   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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