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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:47:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ETF_alpha.html
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#====================================
# Aligned_structures: 2
#   1: 1efpa.pdb
#   2: 1efva.pdb
#
# Length:        314
# Identity:      166/314 ( 52.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    166/314 ( 52.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/314 (  2.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1efpa.pdb               1  -AVLLLGEVTNGALNRDATAKAVAAVKAL-GDVTVLCAGASAKAAAEEAAKIAGVAKVLV   58
1efva.pdb               1  QSTLVIAEHANDSLA-PITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLV   59
                              L   E  N  L    T     A   L G V  L AG      A    K AG AKVLV

1efpa.pdb              59  AEDALYGHRLAEPTAALIVGLA---GDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSA  115
1efva.pdb              60  AQHDVYKGLLPEELTPLILATQKQFN-YTHICAGASAFGKNLLPRVAAKLEVAPISDIIA  118
                           A    Y   L E    LI         Y HI A A    KN  PRVAA L V   SD  A

1efpa.pdb             116  ILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTE-TAAAADPGLS  174
1efva.pdb             119  IKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEIS  178
                           I   DTF R IYAGNA   VK     KVF  R  SFDAA   G     E          S

1efpa.pdb             175  SWVADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYA  234
1efva.pdb             179  EWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFV  238
                            W       SDRPELT A  VVSGGRGL S E F     LAD L AAVGASRAAVD G  

1efpa.pdb             235  PNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVG  294
1efva.pdb             239  PNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVA  298
                           PND QVGQTGK VAPELY AVGISGAIQHLAGMKDSK IVAINKD EAPIFQ ADYG V 

1efpa.pdb             295  DLFSVVPELTGKL-  307
1efva.pdb             299  DLFKVVPEMTEILK  312
                           DLF VVPE T  L 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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