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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:02:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/EGF_Lam.html
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#====================================
# Aligned_structures: 3
# 1: 1klo1.pdb
# 2: 1klo2.pdb
# 3: 1klo3.pdb
#
# Length: 73
# Identity: 6/ 73 ( 8.2%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 21/ 73 ( 28.8%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 35/ 73 ( 47.9%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1klo1.pdb 1 ---CPCPGGSSCAIVPKT------KEVVCTHCPTGTAGKRCELCDDGYFGDPL---GS-N 47
1klo2.pdb 1 ---CQCNDNI----DPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNP-AD 52
1klo3.pdb 1 CAC--NPYGT----VQQQS-SCNPVTGQC-QCLPHVSGRDCGTCDPGYYNL-QSGQGC-E 50
cp g vp tg C C taG C Cd Gyfg l g
1klo1.pdb 48 -GPVRLCRP---- 55
1klo2.pdb 53 ---------KCKA 56
1klo3.pdb 51 R------------ 51
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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