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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:12:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DeoC.html
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#====================================
# Aligned_structures: 2
#   1: 1jcla.pdb
#   2: 1o0ya.pdb
#
# Length:        280
# Identity:       63/280 ( 22.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/280 ( 22.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           57/280 ( 20.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jcla.pdb               1  HM--------------TDLKA-----------SSLRALKLMDLTTLNDDDTDEKVIALCH   35
1o0ya.pdb               1  --HHHHMIEYRIEEAVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCL   58
                                                                      T L    T      LC 

1jcla.pdb              36  QAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIDIALAETRAAI   95
1o0ya.pdb              59  EARE--NRFHGVCVNPCYVKLAREELE---GTDVKVVTVVGFPLGANETRTKAHEAIFAV  113
                            A          C  P     AR  L           TV  FP G         E   A 

1jcla.pdb              96  AYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKA  155
1o0ya.pdb             114  ESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVK--GKVVKVIIETCYL-DTEEKIAA  170
                             GADE D V     L A              E         KVIIET  L D      A

1jcla.pdb             156  SEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQK  215
1o0ya.pdb             171  CVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVG----DE-MGVKASGGIRTFEDAVK  225
                             IS  AGA F KTSTG     AT E    M             G K  GG RT EDA K

1jcla.pdb             216  YLAIADELFGADWADARHYRFGASSLLASLLKALGHG---  252
1o0ya.pdb             226  MIMYG-----------ADRIGT-SSGVKIVQGGEE--RYG  251
                                                  SS               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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