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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:12:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DUF101.html
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#====================================
# Aligned_structures: 2
#   1: 1j5ua.pdb
#   2: 1jw3a.pdb
#
# Length:        146
# Identity:       22/146 ( 15.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     22/146 ( 15.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/146 ( 18.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1j5ua.pdb               1  HHHRKPIEH--TA-DIAYEISGNSYEELLEEARNILLEEEGIVL-----DTEEKEK-YPL   51
1jw3a.pdb               1  ---MKGFEFFDVTADAGFWAYGHDLEEVFENAALAMFEVMT---DTSLVEAAEERRVEIT   54
                               K  E      D      G   EE  E A     E              E       

1j5ua.pdb              52  EE-TEDAFFDTVNDWILEISKG-WAP----WRIKREG----NELKVTFRKIRK--KEGTE   99
1jw3a.pdb              55  SEDRVSLLYDWLDELLFIHDTEFILFSKFKVKIDEKDDGLHLTGTAMGEEIKEGHERRDE  114
                            E       D                      I                 I        E

1j5ua.pdb             100  IKALTYHLLKFERDGDVLKTKVVFDT  125
1jw3a.pdb             115  VKAVTFHMMEILDEDGLIKARVILDL  140
                            KA T H           K  V  D 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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