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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:38:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DSBA.html
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#====================================
# Aligned_structures: 2
#   1: 1bed.pdb
#   2: 1fvka.pdb
#
# Length:        191
# Identity:       70/191 ( 36.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/191 ( 36.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/191 (  6.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bed.pdb                1  AQFKEGEHYQVLKTPASSSP-VVSEFFSFYCPHCNTFE---PIIAQLKQQLPEGAKFQKN   56
1fvka.pdb               1  AQYEDGKQYTTLEKPV-AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY   59
                           AQ   G  Y  L  P       V EFFSF CPHC  FE    I    K  LPEG K  K 

1bed.pdb               57  HVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGID  116
1fvka.pdb              60  HVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQT-IRSASDIRDVFINAGIK  118
                           HV FMGG  G     A A   AL VEDK     F                R  F   GI 

1bed.pdb              117  AAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVK------SLDEY  170
1fvka.pdb             119  GEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQY  178
                               DAA N F V S V    K   D  L GVPA  VN  Y    Q             Y

1bed.pdb              171  FDLVNYLLTLK  181
1fvka.pdb             179  ADTVKYLSEK-  188
                            D V YL    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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