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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:37:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DPS.html
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#====================================
# Aligned_structures: 2
#   1: 1dpsa.pdb
#   2: 1qgha.pdb
#
# Length:        170
# Identity:       35/170 ( 20.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/170 ( 20.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/170 ( 18.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dpsa.pdb               1  SKATNLLYTRNDVSDSEKK-ATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD   59
1qgha.pdb               1  -------------------VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMD   41
                                                T E LN QV           Q HW MRG NF   HE  D

1dpsa.pdb              60  GFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLD--IHNVQDHLKELADRY  117
1qgha.pdb              42  DLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEE-APYTKPKTMDQLMEDLVGTL  100
                                     D  AER    GG    T                            L    

1dpsa.pdb             118  AIVANDVRKAIGEA--K-DDDTADILTAASRDLDKFLWFIECNIE-----  159
1qgha.pdb             101  ELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE  150
                                     I       DD T D L A     DK  W            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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