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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:24:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_gyraseB_N2.html
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#====================================
# Aligned_structures: 2
#   1: 1ei1a.pdb
#   2: 1kija.pdb
#
# Length:        396
# Identity:      174/396 ( 43.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    174/396 ( 43.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/396 (  4.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ei1a.pdb               1  SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV   60
1kija.pdb               1  -------AIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILV   52
                                   I VLKGL  VR RP MYIG T    G HH   E  DNA DEALAG   EI V

1ei1a.pdb              61  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG-KFDDNSYKVSGG--LHGV  117
1kija.pdb              53  RLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE---QGAYKVSGGLHGV  109
                               D S  V D GRGIP    PEEG  A EVI   LH GG               LHGV

1ei1a.pdb             118  GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET--EKTGTMVRFWPSLETF  175
1kija.pdb             110  GASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIF  169
                           G SVVNALS        REGK HR     G    PL V GE    KTGT V F P  E F

1ei1a.pdb             176  TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI  235
1kija.pdb             170  GN-LRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFAKALAEGEDLL  228
                            N   F       RLRE   L  G      D   GKE  F   GG   F   L       

1ei1a.pdb             236  HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY  295
1kija.pdb             229  YEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQY  288
                               F          VEV      G    I    N IP RDGGTHL  F  A  R LN Y

1ei1a.pdb             296  MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL  355
1kija.pdb             289  AKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYER  348
                             K G  K      TGDD  EGL AVVSVK P P F  QTK KL   E   AV Q   E 

1ei1a.pdb             356  LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT  391
1kija.pdb             349  LLEILEENPRIAKAVYEKALRAAQAREAARKARELV  384
                           L E L ENP  AK V  K   AA AREAAR ARE  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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